RnoALTA0019795-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001224 | Itgb2
Description
integrin subunit beta 2 [Source:RGD Symbol;Acc:1305581]
Coordinates
chr20:11800072-11815647:-
Coord C1 exon
chr20:11815558-11815647
Coord A exon
NA
Coord C2 exon
chr20:11800072-11800132
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TCTGGCCCTTCTCTCCACAGGAC
3' ss Score
14.32
Exon sequences
Seq C1 exon
CACCACCACAGAGCCAGCTGGTGAGAAGCAGGCAGAGACATCTCCAGTCAGTCAGATTCACGGATTGGAGGCTTCCTGGGACCAAGAGGG
Seq A exon
NA
Seq C2 exon
GACATGCTGGGCCCACACACACTGCTACTCATCCTAGCTGGACTACTCTTCCTGGGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001224-0-2,0-1,0-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCACAGAGCCAGCT
R:
TCCCAGGAAGAGTAGTCCAGC
Band lengths:
146-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]