MmuALTA1000598-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000001249 | Hpn
Description
hepsin [Source:MGI Symbol;Acc:MGI:1196620]
Coordinates
chr7:31114678-31115275:-
Coord C1 exon
chr7:31115136-31115275
Coord A exon
chr7:31114733-31114744
Coord C2 exon
chr7:31114678-31114732
Length
12 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CTCCTTGTTCCTGTCCCTAGGTT
3' ss Score
12.64
Exon sequences
Seq C1 exon
GGCTCGGCAGGCCCCACGCTGCTGGCTGCTGCTGCCACCCTTGCCTTCCGGGCTGTCCGCTGCTGTGGGGACAGACACCATGCCCCTGCCCAGGCCCGGAGACTAACCCCAAACCTGCACCATCTCCGGCGAACCCCAGG
Seq A exon
GTTCCGCCCCAG
Seq C2 exon
CCCAACAGGTCAACCTGGGAATCATTAACAAGAGTCCCTGACATGGCGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001249-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACTAACCCCAAACCTGC
R:
TTCGCCATGTCAGGGACTCTT
Band lengths:
93-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types