MmuALTA1000805-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000001750 | Tcirg1
Description
T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 [Source:MGI Symbol;Acc:MGI:1350931]
Coordinates
chr19:3896604-3896902:-
Coord C1 exon
chr19:3896795-3896902
Coord A exon
chr19:3896707-3896721
Coord C2 exon
chr19:3896604-3896706
Length
15 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
CATGACCTCTTACCGTGCAGTTT
3' ss Score
7.34
Exon sequences
Seq C1 exon
GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG
Seq A exon
TTTGTCCCTTCTGAG
Seq C2 exon
ATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001750-48-47,48-46-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGGAGAAGGCTGGGAG
R:
GCAAGTAGGAGGCTGTGTTGG
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types