GgaALTA1031952-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003516 | TCIRG1
Description
V-type proton ATPase 116 kDa subunit a isoform 3 [Source:RefSeq peptide;Acc:NP_990053]
Coordinates
chr5:206965-207289:+
Coord C1 exon
chr5:206965-207075
Coord A exon
NA
Coord C2 exon
chr5:207169-207289
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCCACCTCTGTCCCTGCAGCAC
3' ss Score
10.95
Exon sequences
Seq C1 exon
CCTGCAGCCACGGTGGAGCAGGAGCCACTGCTGGAAGGGCAGGAGGCCGGCAACTCTGTCAATGCCACCAAGGAAGATGTGGAGAGTGGGGGGCACGGCCCTGATGCCGAG
Seq A exon
NA
Seq C2 exon
CACATGGACTTCTCTGAGGTCTTCATGCACCAAGCCATCCACACCATCGAGTACTGCCTGGGCTGCATCTCCAACACCGCGTCCTACCTGCGGCTCTGGGCGCTCAGCCTTGCCCACGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003516-21-27,21-26-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.5=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCAAGGAAGATGTGGAG
R:
GTACTCGATGGTGTGGATGGC
Band lengths:
102-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]