DreALTA0029389-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000105142 | tcirg1b
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3b [Source:ZFIN;Acc:ZDB-GENE-040426-2022]
Coordinates
chr14:16484177-16484900:-
Coord C1 exon
chr14:16484811-16484900
Coord A exon
chr14:16484265-16484294
Coord C2 exon
chr14:16484177-16484264
Length
30 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CATACATTATTTGAAAGGAGTTT
3' ss Score
-19.18
Exon sequences
Seq C1 exon
GAAGACAGACGTCCTCTTCTTGCAGAAAACGGCTCTATAAATTCACAACAAGGAGATGTGGATGCAAGAGGAGGAGGAGGAGAGGAGGAG
Seq A exon
TTTGATACAGCGAACGTCTTCATGCACCAG
Seq C2 exon
GCCATTCACACTATTGAGTATTGTCTTGGGTGTATCTCCAACACGGCCTCATACCTGCGGCTCTGGGCCCTCAGTCTGGCTCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105142-23-29,23-28,23-27-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(5.2=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTCTTGCAGAAAACGGC
R:
GAGGCCGTGTTGGAGATACAC
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]