MmuALTA1001994-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000004285 | Atp6v1f
Description
ATPase, H+ transporting, lysosomal V1 subunit F [Source:MGI Symbol;Acc:MGI:1913394]
Coordinates
chr6:29468068-29469226:+
Coord C1 exon
chr6:29468068-29468167
Coord A exon
chr6:29468967-29469176
Coord C2 exon
chr6:29469177-29469226
Length
210 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCAC
5' ss Score
-0.49
3' ss Seq
TTTCCTCATTCCTTTTCTAGAAT
3' ss Score
11.91
Exon sequences
Seq C1 exon
GGGGACCGGGATGGTCCCGGAAGTCGTCTGTCCACCCTGAGCAGGGGCCTCCGCCATCTAAGTTCCCTTTTGGGGCTCAGTGGGGTCCGGCCTACCGCAG
Seq A exon
AATTACTATGCCAAATCTCAGGAATAAACTGCCCTCACCTGTTTCCCCTAAATAGCCCAGTCCAGGGATGCTGGCTGAGACTAGTTCCCACAGCCTGGAGCGTGGCAGGCTCTGACCTGGGAGACTGATCTCTTAGCAAACCAGTAAAGTGACCTCCATTGCCACTGGAGGACAGATCTTACTTCCAAGGATTTACCATGTTTCCAACAG
Seq C2 exon
GAAGGGGTCCTAAAATCACCAAGCCAAATCTACTCCATGCTCGACACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004285-1-3,1-2,1-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0199012=ATP-synt_F=PU(3.3=5.9)
A:
NA
C2:
PF0199012=ATP-synt_F=PU(3.3=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTCCCGGAAGTCGTCT
R:
TTGTGTCGAGCATGGAGTAGA
Band lengths:
140-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types