MmuALTD1001714-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000004285 | Atp6v1f
Description
ATPase, H+ transporting, lysosomal V1 subunit F [Source:MGI Symbol;Acc:MGI:1913394]
Coordinates
chr6:29468068-29470512:+
Coord C1 exon
chr6:29468068-29468167
Coord A exon
NA
Coord C2 exon
chr6:29470067-29470512
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCAC
5' ss Score
-0.49
3' ss Seq
CTCTTCTTCTCCCCCAACAGGCA
3' ss Score
11.47
Exon sequences
Seq C1 exon
GGGGACCGGGATGGTCCCGGAAGTCGTCTGTCCACCCTGAGCAGGGGCCTCCGCCATCTAAGTTCCCTTTTGGGGCTCAGTGGGGTCCGGCCTACCGCAG
Seq A exon
NA
Seq C2 exon
GCAATTTCTAAACAGGGATGACATTGGCATCATTCTCATCAACCAGTACATCGCAGAGATGGTTCGGCACGCCCTGGATGCCCACCAGAGGTCCATTCCAGCTGTCCTGGAGATCCCGTCCAAGGAGCATCCCTACGATGCAGCCAAAGACTCCATCCTGCGCAGGGCCAAGGGCATGTTCACCGCTGAAGACCTGCGCTAGGGCTGCTCAGCCCTCAGCCCTCCTCATCACCAGGCCTCTCCTGGTTTGCCATGCTCTATTTAAGTGTCAAGCCTTGGTTTCCAGCCCCTCCCTTCCTCTTCACTGAGTGGCTCGTAAGCTGTTGGGGTTCGGTTGTTCAGGTCTAGGCTGGGTAGAGAAAGAAAGCCCAACTGTTTCTCCACTGCCTCCTCCCTGTGCTGTTAATAGTATCGTTGTTGATATTAAAGGAATTATTCTCTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004285-1-4,2-4,3-4,4-4-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0199012=ATP-synt_F=PU(3.3=5.9)
A:
NA
C2:
PF0199012=ATP-synt_F=PD(54.9=82.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGCCATCTAAGTTCCCT
R:
AGGTCTTCAGCGGTGAACATG
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types