MmuALTA1003132-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109838080-109843269:-
Coord C1 exon
chr7:109843180-109843269
Coord A exon
chr7:109838197-109838266
Coord C2 exon
chr7:109838080-109838196
Length
70 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGC
5' ss Score
6.57
3' ss Seq
CAACCCCTCTGTGCTTTCAGGGT
3' ss Score
9.78
Exon sequences
Seq C1 exon
AGCAAGAGGGCACTGTCTTGGAGGGGACAGAGAGCAATGCCACATCAGTGGCGGATGGAGATAAACGGGTGAAGCGTCGGCTGCTCATGG
Seq A exon
GGTTGTCAGACAGTAATATCTGTAGCAGAGCTCCTTTAGGAAGCTAACTGCCCTTCCCACCTCTCGTCAG
Seq C2 exon
AAACGTGTGCCGTCAACAACGGAGGCTGCGACCGCACCTGTAAGGACACGTCCACAGGCGTCCACTGCAGCTGCCCCACTGGATTCACTCTCCAGGTGGATGGGAAGACATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-10-8,10-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGGGGACAGAGAGCAAT
R:
TGGAGAGTGAATCCAGTGGGG
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types