MmuALTA1004778-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000016942 | Tmprss6
Description
transmembrane serine protease 6 [Source:MGI Symbol;Acc:MGI:1919003]
Coordinates
chr15:78465109-78468634:-
Coord C1 exon
chr15:78468426-78468634
Coord A exon
chr15:78465309-78465343
Coord C2 exon
chr15:78465109-78465308
Length
35 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CAGCAAAAGCTCCCTTGCAGATG
3' ss Score
1.47
Exon sequences
Seq C1 exon
AGTTTCATTGTCGCCCTGGACCTGACAGGAGAGGCCCATGGAACTTGGGGCCACAGGCCACAAGGGACAAGGGCCAGACACCCCAGCCATGGCTCCAGGCCATTGATCCAACCTAAGCTGGCCAGTTGGGGGTGGAAAGACCTTGGCCTGGATAAACAGAGGCCTCCAGGCCTGTGTGCAGGCCCGGCACCTACCTTCCACTCTTGAAG
Seq A exon
ATGCCGAGATGTTTCCAGCTCCCCTGTTCTACCAG
Seq C2 exon
GATGCCCACCACCGAGGTCCCCCAAGCGGCTGATGGTCAGGGCGATGCGGGTGATGGAGAGGAAGCTGCTGAGCCAGAGGGGAAGTTCAAGCCCCCAAAAAACACCAAGAGAAAAAACCGGGACTACGTCCGCTTCACGCCACTGTTGCTGGTCTTGGCTGCGCTGGTCTCAGCAGGGGTCATGCTTTGGTATTTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016942-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.443
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCTACCTTCCACTCTTG
R:
TTTTGGGGGCTTGAACTTCCC
Band lengths:
124-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types