RnoALTA0041418-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119685464-119689938:-
Coord C1 exon
chr7:119689737-119689938
Coord A exon
chr7:119685664-119685698
Coord C2 exon
chr7:119685464-119685663
Length
35 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CAGCAAAAGCTCCCTTGCAGATG
3' ss Score
1.47
Exon sequences
Seq C1 exon
ATTGTCCGTCCTGGACCTGACAGGAGGCCCATGGAACTTGGGGCCACAGGCCACGAGGGACAAGGGCCAGACACCCCAGTCATGGTTCCAGGCTATTGATCCAACCTAAGCTGGCCAGTTGTGGGTGGAGAGACCTTGGCCTGGATAAACAGAGGCCTCCAGGCCTGTGTTCAGGCCCAGCACCTACCTTCCACTCTTGAAG
Seq A exon
ATGCCAAGATGTTTCCAGCTCCCCTGTTCTACCAG
Seq C2 exon
GATGCCCACCGCTGAGGTTCCCCAAGCAGCTGGTGGTCAGGGTGATGGAGGTGATGGAGAGGAAGCTGCAGAGCCAGAGGGGGTGTTCAAGGCCCCCAGAAACGCCAAGAGAAAAGACAGGGACTACGTCCGCTTCACACCACTGTTGCTGGTCTTGGCTGCGTTGGCTTCGGCAGGAGTCATGCTCTGGTATTTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184-0-3,0-2,0-1,0-0-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.354
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGATAAACAGAGGCCTC
R:
CTCCATCACCTCCATCACCCT
Band lengths:
123-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]