RnoEX0092137 @ rn6
Exon Skipping
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119680617-119689938:-
Coord C1 exon
chr7:119689737-119689938
Coord A exon
chr7:119685464-119685698
Coord C2 exon
chr7:119680617-119680750
Length
235 bp
Sequences
Splice sites
3' ss Seq
CAGCAAAAGCTCCCTTGCAGATG
3' ss Score
1.47
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
ATTGTCCGTCCTGGACCTGACAGGAGGCCCATGGAACTTGGGGCCACAGGCCACGAGGGACAAGGGCCAGACACCCCAGTCATGGTTCCAGGCTATTGATCCAACCTAAGCTGGCCAGTTGTGGGTGGAGAGACCTTGGCCTGGATAAACAGAGGCCTCCAGGCCTGTGTTCAGGCCCAGCACCTACCTTCCACTCTTGAAG
Seq A exon
ATGCCAAGATGTTTCCAGCTCCCCTGTTCTACCAGGATGCCCACCGCTGAGGTTCCCCAAGCAGCTGGTGGTCAGGGTGATGGAGGTGATGGAGAGGAAGCTGCAGAGCCAGAGGGGGTGTTCAAGGCCCCCAGAAACGCCAAGAGAAAAGACAGGGACTACGTCCGCTTCACACCACTGTTGCTGGTCTTGGCTGCGTTGGCTTCGGCAGGAGTCATGCTCTGGTATTTCCTAG
Seq C2 exon
GGTACAAGGCGGAAGTGACCATAAGCCAGGTGTACTCTGGCAGCCTCCGGGTGCTCAACCGCCATTTTTCACAGGACTTGGCCCGACGGGAGTCTATTGCTTTCCGCACTGAAACTGCCAAAGCCCAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.354 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139015=SEA=PU(35.8=84.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAACTTGGGGCCACAG
R:
TCTGGGCTTTGGCAGTTTCAG
Band lengths:
302-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]