BtaEX0037181 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032152 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr5:75898351-75909074:-
Coord C1 exon
chr5:75908910-75909074
Coord A exon
chr5:75903319-75903515
Coord C2 exon
chr5:75898351-75898484
Length
197 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTGTTTCCTTGCCAGGAT
3' ss Score
9.6
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTAAGCAGGGACCTCCAAGACAGGAGATCAGGACCTAGGAATGACCCGGTGACAACATCCAACTGGAGAGTCGGGCCTGGTTCCCTGGGGCAGCAGCCAACTTCCCTGCTCTGAGACCTGGTCTGCTGGGCCTCATGGGCCAGAGAGTGACCGGGTGAGCTGAAG
Seq A exon
GATGCCCATGGCCAAGGCCCCCCAAGCGGCTGGCGGGCAGGGTGATGGAGGTGATGGCGAAGAGGCAGAGCCAGAAGGGATGTTCAAGGCCCCCAAGGATGCGAAGAGAAAAGTCCGAGACTACCTCCGCCTGGCTCCCCTGTGGCTGGCTCTGGTCATGTTGGCTTCAGTGGGGGTCCTGCTCTGGTATTTCCTAG
Seq C2 exon
GGTACAAGGCAGAGGTGACAGTCAGCCAGGTGTACTCAGGCAGCCTCCGCGTGCTCAATCGCCACTTCTCCCAGGACCTTGCCCGCCGGGAGTCCAGTGCCTTCCGCAGTGAAACTGCCAAAGCTCAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032152_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.291 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139015=SEA=PU(38.4=84.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGACCCGGTGACAACATCC
R:
TCTGAGCTTTGGCAGTTTCACT
Band lengths:
255-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development