MmuEX6054747 @ mm9
Exon Skipping
Gene
ENSMUSG00000016942 | Tmprss6
Description
transmembrane serine protease 6 [Source:MGI Symbol;Acc:MGI:1919003]
Coordinates
chr15:78291675-78299064:-
Coord C1 exon
chr15:78298856-78299064
Coord A exon
chr15:78295539-78295773
Coord C2 exon
chr15:78291675-78291808
Length
235 bp
Sequences
Splice sites
3' ss Seq
CAGCAAAAGCTCCCTTGCAGATG
3' ss Score
1.47
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
AGTTTCATTGTCGCCCTGGACCTGACAGGAGAGGCCCATGGAACTTGGGGCCACAGGCCACAAGGGACAAGGGCCAGACACCCCAGCCATGGCTCCAGGCCATTGATCCAACCTAAGCTGGCCAGTTGGGGGTGGAAAGACCTTGGCCTGGATAAACAGAGGCCTCCAGGCCTGTGTGCAGGCCCGGCACCTACCTTCCACTCTTGAAG
Seq A exon
ATGCCGAGATGTTTCCAGCTCCCCTGTTCTACCAGGATGCCCACCACCGAGGTCCCCCAAGCGGCTGATGGTCAGGGCGATGCGGGTGATGGAGAGGAAGCTGCTGAGCCAGAGGGGAAGTTCAAGCCCCCAAAAAACACCAAGAGAAAAAACCGGGACTACGTCCGCTTCACGCCACTGTTGCTGGTCTTGGCTGCGCTGGTCTCAGCAGGGGTCATGCTTTGGTATTTCCTAG
Seq C2 exon
GGTACAAAGCGGAAGTGACCGTAAGCCAGGTGTACTCTGGCAGCCTCCGGGTGCTCAACCGTCATTTCTCCCAGGACCTGGGCCGACGGGAGTCTATTGCTTTCCGCAGTGAATCTGCCAAAGCCCAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016942-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.443 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139015=SEA=PU(34.9=84.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAACTTGGGGCCACAG
R:
CTGGGCTTTGGCAGATTCACT
Band lengths:
301-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: