MmuEX6054747 @ mm10
Exon Skipping
Gene
ENSMUSG00000016942 | Tmprss6
Description
transmembrane serine protease 6 [Source:MGI Symbol;Acc:MGI:1919003]
Coordinates
chr15:78461245-78468634:-
Coord C1 exon
chr15:78468426-78468634
Coord A exon
chr15:78465109-78465343
Coord C2 exon
chr15:78461245-78461378
Length
235 bp
Sequences
Splice sites
3' ss Seq
CAGCAAAAGCTCCCTTGCAGATG
3' ss Score
1.47
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
AGTTTCATTGTCGCCCTGGACCTGACAGGAGAGGCCCATGGAACTTGGGGCCACAGGCCACAAGGGACAAGGGCCAGACACCCCAGCCATGGCTCCAGGCCATTGATCCAACCTAAGCTGGCCAGTTGGGGGTGGAAAGACCTTGGCCTGGATAAACAGAGGCCTCCAGGCCTGTGTGCAGGCCCGGCACCTACCTTCCACTCTTGAAG
Seq A exon
ATGCCGAGATGTTTCCAGCTCCCCTGTTCTACCAGGATGCCCACCACCGAGGTCCCCCAAGCGGCTGATGGTCAGGGCGATGCGGGTGATGGAGAGGAAGCTGCTGAGCCAGAGGGGAAGTTCAAGCCCCCAAAAAACACCAAGAGAAAAAACCGGGACTACGTCCGCTTCACGCCACTGTTGCTGGTCTTGGCTGCGCTGGTCTCAGCAGGGGTCATGCTTTGGTATTTCCTAG
Seq C2 exon
GGTACAAAGCGGAAGTGACCGTAAGCCAGGTGTACTCTGGCAGCCTCCGGGTGCTCAACCGTCATTTCTCCCAGGACCTGGGCCGACGGGAGTCTATTGCTTTCCGCAGTGAATCTGCCAAAGCCCAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016942_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.443 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0139015=SEA=PU(34.9=84.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAACTTGGGGCCACAG
R:
CTGGGCTTTGGCAGATTCACT
Band lengths:
301-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types