MmuALTA1007266-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105333624-105336252:+
Coord C1 exon
chr11:105333624-105333731
Coord A exon
chr11:105336137-105336195
Coord C2 exon
chr11:105336196-105336252
Length
59 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGCCCTCTCTCTTGAGCCAGGGT
3' ss Score
4.23
Exon sequences
Seq C1 exon
GAAGGACGCTGGAACGACAGTCCCTGTAACCAGTCCTTGCCATCCATTTGCAAGAAGGCAGGCCGGCTGAGCCAGGGCGCTGCGGAGGAGGACCACGGCTGCCGGAAG
Seq A exon
GGTTGGACGTGGCATAGCCCATCCTGCTACTGGCTGGGAGAGGACCAAGTGATCTACAG
Seq C2 exon
TGATGCCCGGCGCCTGTGTACTGACCATGGCTCTCAGCTGGTCACCATCACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-17-17,17-16,17-15-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(16.7=50.0)
A:
NA
C2:
PF0005916=Lectin_C=PU(22.0=61.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACAGTCCCTGTAACCAGT
R:
AGCTGAGAGCCATGGTCAGTA
Band lengths:
134-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types