RnoALTA0024528-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93563947-93566221:+
Coord C1 exon
chr10:93563947-93564054
Coord A exon
NA
Coord C2 exon
chr10:93566106-93566221
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGCCCTCTCTCTTGAGCCAGGGT
3' ss Score
4.23
Exon sequences
Seq C1 exon
GAAGGACGCTGGAATGACAGTCCCTGTAACCAATCCTTGCCCTCCATCTGCAAGAAGGCAGGCCGACTGAGCCAGGGCACTGCAGAGGAGGACCATGGCTGCCGGAAG
Seq A exon
NA
Seq C2 exon
GGTTGGACATGGCATAGCCCATCCTGCTACTGGCTGGGAGAGGACCAAGTGATCTACAGTGATGCCCGGCGTCTGTGTACTGACCATGGCTCTCAGCTGGTCACCATCACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548-11-14,11-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(16.7=50.0)
A:
NA
C2:
PF0005916=Lectin_C=PU(22.0=61.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCTCCATCTGCAAGAAG
R:
CAGTAGCAGGATGGGCTATGC
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]