MmuALTA1008146-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113123117-113126877:+
Coord C1 exon
chr12:113123117-113123234
Coord A exon
NA
Coord C2 exon
chr12:113126780-113126877
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATTTGTTCCCTGTAGGTGAGGAG
3' ss Score
-3.01
Exon sequences
Seq C1 exon
GATTTCTTCTTCTACTCTCTAGTCTACGACCCACAGCAGAAGACCCTCCTGGCTGATAAAGGGGAAATTCGTGTAGGAAACCGGTACCAGGCTGACATCACTGACTTGCTGAAAGAAG
Seq A exon
NA
Seq C2 exon
GAGGACGGCCGCGATCAGTCAAAACTGGAGACCAAGGTGTGGGAAGCCCACAATCCACTTGTGGATAAGCAGATTGACCAGTTTCTGGTGGTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-13-14,13-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.030 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(11.8=46.3),PF0144819=ELM2=PU(32.7=43.9)
A:
NA
C2:
PF0144819=ELM2=FE(58.2=100)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGGCTGATAAAGGGGA
R:
TCCAGTTTTGACTGATCGCGG
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types