MmuALTD1006789-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113123139-113126877:+
Coord C1 exon
chr12:113123139-113123234
Coord A exon
chr12:113123235-113123239
Coord C2 exon
chr12:113126780-113126877
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCAG
5' ss Score
-0.37
3' ss Seq
ATTTGTTCCCTGTAGGTGAGGAG
3' ss Score
-3.01
Exon sequences
Seq C1 exon
TCTACGACCCACAGCAGAAGACCCTCCTGGCTGATAAAGGGGAAATTCGTGTAGGAAACCGGTACCAGGCTGACATCACTGACTTGCTGAAAGAAG
Seq A exon
GTGAG
Seq C2 exon
GAGGACGGCCGCGATCAGTCAAAACTGGAGACCAAGGTGTGGGAAGCCCACAATCCACTTGTGGATAAGCAGATTGACCAGTTTCTGGTGGTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-13-14,14-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.049 A=NA C2=0.165
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.2=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
NA
C2:
PF0144819=ELM2=FE(58.2=100)
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGGCTGATAAAGGGGA
R:
TCCAGTTTTGACTGATCGCGG
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types