MmuALTA1009374-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29062473-29063946:-
Coord C1 exon
chr14:29063885-29063946
Coord A exon
NA
Coord C2 exon
chr14:29062473-29062535
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TGTTTCTCCGCACAGTTTAGGTG
3' ss Score
3.31
Exon sequences
Seq C1 exon
AAACGGGTTTTGGTGATGACCAATGACTACTACTATACAGACATCAAGGGTACTCCTTTCAG
Seq A exon
NA
Seq C2 exon
GTGTGGCGCTCTCCAGGGGCCATGGGAAATACTTCTTCCGAGGGAATGTAACCATTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-44-53,44-52-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGGGTTTTGGTGATGACC
R:
TATTTCCCATGGCCCCTGGAG
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types