MmuALTA1010458-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000022622 | Acr
Description
acrosin prepropeptide [Source:MGI Symbol;Acc:MGI:87884]
Coordinates
chr15:89568334-89569543:+
Coord C1 exon
chr15:89568334-89568434
Coord A exon
chr15:89569274-89569462
Coord C2 exon
chr15:89569463-89569543
Length
189 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
GTGTCCCTGCCTCCCCCCAGGTG
3' ss Score
12.47
Exon sequences
Seq C1 exon
AGCTTGCAGGCCAGGTTAGGGCAGGAGTATGGTAGAGATGCTGCCAACTGTCGCTGTGCTGGTCTTGGCAGTGTCCGTGGTTGCCAAGGATAACACCACGT
Seq A exon
GTGTGGAGGTACAAAGACTGGATGGCTCTTCTTGATTTGAGCAGTTTCCTGGTCTCTCCTCAGTGGTCCCTGTGGGTTACGATTCAGGCAGAACTCACAAGCAGGTACCCGGATTGTCAGTGGGCAGAGTGCGCAGCTTGGGGCCTGGCCCTGGATGGTCAGCTTACAGATCTTCACGTCCCATAACAG
Seq C2 exon
CCGCAGGTACCACGCCTGTGGAGGCAGCCTCCTGAACTCCCACTGGGTGCTCACAGCTGCCCACTGCTTCGATAACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022622-1-4,1-3,1-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008921=Trypsin=PU(21.3=74.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGCAGGCCAGGTTAGG
R:
TTTGTTATCGAAGCAGTGGGC
Band lengths:
179-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types