RnoALTA0002011-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000029762 | Acr
Description
acrosin [Source:RGD Symbol;Acc:2024]
Coordinates
chr7:130542202-130543248:+
Coord C1 exon
chr7:130542202-130542299
Coord A exon
chr7:130543145-130543207
Coord C2 exon
chr7:130543208-130543248
Length
63 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
GTGTCCCTGCCTCCCCCCAGGTG
3' ss Score
12.47
Exon sequences
Seq C1 exon
AGGCCAGGTTAGGGCAGGAGTATGGTAGAGATGCTGCCAACTGTCGTTGCGCTGGTCCTGGCAGTGTCCGTGGTTGCCAAGGATAACACCACGTGTGA
Seq A exon
GTGTGGAGGTACAAAGACTGGATGCCTCTTCTTGGTTTGAGCAGTTTCCTGGTCTCTCCTCAG
Seq C2 exon
TGGCCCCTGTGGGTTACGATTCAGGCAGAACCCACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029762-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(21.3=74.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTAGGGCAGGAGTATGGT
R:
GCTTGTGGGTTCTGCCTGAAT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]