RnoALTA0002011-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000029762 | Acr
Description
acrosin [Source:RGD Symbol;Acc:2024]
Coordinates
chr7:130542202-130543248:+
Coord C1 exon
chr7:130542202-130542299
Coord A exon
NA
Coord C2 exon
chr7:130543208-130543248
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
GTTTCCTGGTCTCTCCTCAGTGG
3' ss Score
8.85
Exon sequences
Seq C1 exon
AGGCCAGGTTAGGGCAGGAGTATGGTAGAGATGCTGCCAACTGTCGTTGCGCTGGTCCTGGCAGTGTCCGTGGTTGCCAAGGATAACACCACGTGTGA
Seq A exon
NA
Seq C2 exon
TGGCCCCTGTGGGTTACGATTCAGGCAGAACCCACAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029762-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(21.3=74.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTAGGGCAGGAGTATGGT
R:
GCTTGTGGGTTCTGCCTGAAT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]