RnoINT0012283 @ rn6
Intron Retention
Gene
ENSRNOG00000029762 | Acr
Description
acrosin [Source:RGD Symbol;Acc:2024]
Coordinates
chr7:130542203-130543414:+
Coord C1 exon
chr7:130542203-130542299
Coord A exon
chr7:130542300-130543207
Coord C2 exon
chr7:130543208-130543414
Length
908 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
GTTTCCTGGTCTCTCCTCAGTGG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GGCCAGGTTAGGGCAGGAGTATGGTAGAGATGCTGCCAACTGTCGTTGCGCTGGTCCTGGCAGTGTCCGTGGTTGCCAAGGATAACACCACGTGTGA
Seq A exon
GTAAGTGTTGGGCACCTTGGTGGGTAAGGGTGCTCATGAATAACAGGTCCTATCCAGACGCCCTCTGTCTGGGGCTAGAGTGAGTAGCACATTGCCTTTGCAGGCTCTGGATAGTTTCATAGTTCCTGTGATCCACATCCCCAGTTCAGATCCTTCCTGCTTCCAGAACTGTGATCCTAGAATCATTAGGTTTCCAGCTGCCCCTGGCTTCCCAGGAAGGTGGGGTGAGGGGTGAGGATGACCCATTATTCCTAGATCTCTTCCCACTACCTCAGTGACTGACTTCCTTGCCTGTCAGGTATCGGGGCCTAAACTTTGGGAGCCCCTGTTCTCCTCTGGATGATTGAGGTCAATCACCTGTGTGTGAATTCAAAGGCATCGTATGCCTTTGCACCTCTATTCCACCCGAAGACTCTCATTCCTAAGGGACTCACAATGCAAACAACTCTAAAACTCTAGGTGGCCTCCCCCCACCCCCCATAAGTCCCCAGAACTTCCGGCTCAGGATCCCCTCTGCTTCTTGTGTGATTCTAATGCTCATGAGACACTGTATTTGCGTGCAATTATCTGCAGTTAAGATCTCCAGACCCAGCTCCACAGTTTCTACAACCTCCTTAGTCATGTGACATTTGCCTGAGTCTCCCATCCAAGATTGGTCCTGAAAACCATTACACCTCTCCAAAGCACTTTCGATTACCACCATGTCCAGGGGTTCCCTTCAATACCTTTAGGGCCCGTCTAGATATTTCCCGGAGACTGTGACCTCCTACATACCCTAGGCTGCCTCTCTTTCCCCCGAAGTCCCTCCCCATCTTTCCCAACCCTGTGTCCCTGCCTCCCCCCAGGTGTGGAGGTACAAAGACTGGATGCCTCTTCTTGGTTTGAGCAGTTTCCTGGTCTCTCCTCAG
Seq C2 exon
TGGCCCCTGTGGGTTACGATTCAGGCAGAACCCACAAGCAGGTATCCGGATTGTCGGAGGGCAGACTTCGTCGCCTGGGGCCTGGCCCTGGATGGTCAGTTTACAGATCTTCACGTCCCATAACAGCCGTAGGTATCACGCCTGCGGAGGCAGCCTACTGAACTCCCACTGGGTGCTCACGGCTGCTCACTGCTTCGATAACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029762:ENSRNOT00000045647:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(21.3=74.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTTAGGGCAGGAGTATG
R:
TTTTTGTTATCGAAGCAGTGAGC
Band lengths:
302-1210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]