MmuINT0010068 @ mm10
Intron Retention
Gene
ENSMUSG00000022622 | Acr
Description
acrosin prepropeptide [Source:MGI Symbol;Acc:MGI:87884]
Coordinates
chr15:89568326-89569543:+
Coord C1 exon
chr15:89568326-89568438
Coord A exon
chr15:89568439-89569336
Coord C2 exon
chr15:89569337-89569543
Length
898 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
GTTTCCTGGTCTCTCCTCAGTGG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GAGGTCACAGCTTGCAGGCCAGGTTAGGGCAGGAGTATGGTAGAGATGCTGCCAACTGTCGCTGTGCTGGTCTTGGCAGTGTCCGTGGTTGCCAAGGATAACACCACGTGTGA
Seq A exon
GTAAGTGTTGGTCATCTTGGTAGGGGGGTGAGGGTCCTTATGAATAACAGGTCCTATCTAGACTCCCTTTGTCTGGGCTAGAATGAGCAGTCATCTGAGCCTTAGCAGGCTCTGTAGTGTCACAGTTCCTGTGACCCCACATCTTTAACTCAGGTCCTTCCTGCTTCCAGAACTGTAATCCTAGAATCATTAGGTTTCTAGCTGACCATGGCTTCCCAGAAAGGGGGTGAGGGGAGAGGGGTGATCCATTGTTCCTAGATCTTTTTCCACTATTTCAGTGACTGGCTTCATTGCCTATCAGGTATTGGGGCCTAAACATTAGGAGACCCTGTTCTCCTCAGGACTTCTGAGGTAAATCTCCTTACGCGTGAATTCAAAGGCATCATATGCCTTTGCATCTCTGTCCACCCAAAGACTCTCATCCCTAAGGGACTCAATGCAAACAACTCCAAAACTCTAGGTAGCCTTTCCCCTGTGATACGTTCCTAGAACTTCCAGCTCAGGATCCCCCCCCCCCCAATGCTTAGGGGACACTGTATTAGCTTGAAATTATTTGCAGTTTTTTTCTCCAGACCCAGATCCACAGCTCCACAACCTCCTGAGTCATGTGACACTTGCTTGGGTCTCCCATCCAAGATTGGTCCTGAAAAACCATTAGACCTCCACTCCATAGCATTTTTGACTACCACTGTGTCCAGGGTTTCCCGTCAATACCTCTAGGGCCCATCTAGATATTTCCTGGAGACTGTGACCTCCTGCATACCTTAGGCTGCCTCTCCTACCCTAAAGCTCCCCGCCCCATCTTTCCCAACCCTGTGTCCCTGCCTCCCCCCAGGTGTGGAGGTACAAAGACTGGATGGCTCTTCTTGATTTGAGCAGTTTCCTGGTCTCTCCTCAG
Seq C2 exon
TGGTCCCTGTGGGTTACGATTCAGGCAGAACTCACAAGCAGGTACCCGGATTGTCAGTGGGCAGAGTGCGCAGCTTGGGGCCTGGCCCTGGATGGTCAGCTTACAGATCTTCACGTCCCATAACAGCCGCAGGTACCACGCCTGTGGAGGCAGCCTCCTGAACTCCCACTGGGTGCTCACAGCTGCCCACTGCTTCGATAACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022622:ENSMUST00000023295:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(21.3=74.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCACAGCTTGCAGGC
R:
TTTGTTATCGAAGCAGTGGGC
Band lengths:
318-1216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types