HsaINT0002789 @ hg19
Intron Retention
Gene
ENSG00000100312 | ACR
Description
acrosin [Source:HGNC Symbol;Acc:126]
Coordinates
chr22:51176652-51177902:+
Coord C1 exon
chr22:51176652-51176740
Coord A exon
chr22:51176741-51177698
Coord C2 exon
chr22:51177699-51177902
Length
958 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
GTGCTCTGGTCTCTCCCCAGTGG
3' ss Score
9.78
Exon sequences
Seq C1 exon
AGTGCCAGGAGTATGGTTGAGATGCTACCAACTGCCATTCTGCTGGTCTTGGCAGTGTCCGTGGTTGCTAAAGATAACGCCACGTGTGA
Seq A exon
GTAAGTGTCGGGGCACCTTGGTGGGGGAAGGATCTTCTGAGGAGCAGGTACCACCCCGACTCCCTCTGTCCAGGGCTAGGGAAAAGGAGGCTGCATCCCTAACCTGGACCCCCCCTGCTCCCAGAATCAGCAGCCTGGAGCCCCCAGACCCTCAGCTTTCGTGGTTTCCTCCAGAGATGGACCCCTCAGCACCTCAGGCTCCTTGTGCCTCTCCCACTCCCCCAGGGACTGACCCCACTGTCTTGAAGACATGAAGTCCTGATTTTGGGAGCCCTTATCCCCCCACAGACAGCTGTCCCAACCCGTGGTTGCCCCCAACAGCCCCAGGATATCATCGCTTCACACCGCTTGCACCCCTACCCCCCAGTAGGCTCTCTCACTCCAAGGTACCCCGAAATACCAACACCTCCCAAGCTATATGTGGCCTCCCACCCGTGACACAGTTCCCAGAGCCTCCACCTCTAGACCTCCACTGCTCTCAGTGTGCCCCCTACACCTGTGGGCCACAGTATCTGCCCCTGGCTGCTATCCCTCCTCCCATCACTGTCAACGACCCCCTTCATCACCTGACTTCCCTGAGTCTCCCACCCAAGATTGGTTATAAGGACCTCAGGCCATTACACCCCTCTGTCCCCAGGCCCCGCATCCCCACCTCTACCCTCCTGTTCTGCCCAGGGACGGGCCATCCCTCAGGGCCCATGCAGCCTGTCCTGGCTTCCTATGGCCTCCTCTTTCTCCATCTGTGACTGCACCCACAAGACCTGAGAAGTCGTGGCCCCAGAACCATTTCCTAGAGCCTGCGGCTTCCTACATAGCGCAGGCTGCCCCTGCTTTCCCAGAACCCGGAAGCTCTTCCCCACTTTTCCCAACCCCATGTCCCTGCCTCCCCTCAGTTGTGGAGTTACAAGGACAGGCTGTGCTCATGCCAGGTTTGAACTGTGCTCTGGTCTCTCCCCAG
Seq C2 exon
TGGCCCCTGTGGGTTACGGTTCAGGCAAAACCCACAGGGTGGTGTCCGCATCGTCGGCGGGAAGGCTGCACAGCATGGGGCCTGGCCCTGGATGGTCAGCCTCCAGATCTTCACGTACAACAGCCACAGGTACCACACATGTGGAGGCAGCTTGCTGAATTCACGATGGGTGCTCACTGCTGCTCACTGCTTCGTCGGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100312-ACR:NM_001097:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(21.0=73.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGAGTATGGTTGAGATGC
R:
TTTTTGCCGACGAAGCAGTGA
Band lengths:
290-1248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)