MmuALTA1010460-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000022622 | Acr
Description
acrosin prepropeptide [Source:MGI Symbol;Acc:MGI:87884]
Coordinates
chr15:89569746-89573264:+
Coord C1 exon
chr15:89569746-89570029
Coord A exon
chr15:89572976-89573118
Coord C2 exon
chr15:89573119-89573264
Length
143 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GTGCCTTTCTTCCCCCTCAGGAG
3' ss Score
10.95
Exon sequences
Seq C1 exon
AAAAGTCTATGACTGGAGACTGGTTTTCGGAGCACAAGAAATCGAATATGGAAGAAACAAGCCAGTGAAAGAGCCCCAGCAGGAGAGATATGTGCAGAAGATTGTCATCCATGAGAAATACAACGTAGTGACGGAGGGAAATGACATTGCGCTCTTGAAGATCACTCCTCCTGTTACATGTGGGAACTTCATTGGACCCTGCTGTCTACCTCATTTTAAGGCGGGTCCTCCCCAAATACCCCACACCTGCTACGTGACTGGGTGGGGATACATAAAAGAGAAGG
Seq A exon
GAGTGTGAGGGGAGCCTGAGGGGAGCTTTGTTAACCAGAGCGCTGCATAGGATGGATGGAAGCTCACGGTGGTAGGGGAGGAGGCAGGGCTTTCTCCGGCTCCTCCCTGCGCACTGACTGACAACTGTGTGGCCTGGCTGCAG
Seq C2 exon
CCCCCAGGCCATCACCTGTCCTGATGGAAGCACGTGTGGACCTCATTGACCTCGACCTGTGTAACTCAACCCAGTGGTACAATGGGCGTGTCACATCGACTAATGTGTGTGCAGGGTATCCTGAAGGCAAGATTGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022622-4-8,4-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCCAGCAGGAGAGATATG
R:
GTGCTTCCATCAGGACAGGTG
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types