RnoALTA0002013-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000029762 | Acr
Description
acrosin [Source:RGD Symbol;Acc:2024]
Coordinates
chr7:130543614-130546643:+
Coord C1 exon
chr7:130543614-130543897
Coord A exon
NA
Coord C2 exon
chr7:130546635-130546643
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGTGCCTTTCTTCCCCTCAGGAG
3' ss Score
11.73
Exon sequences
Seq C1 exon
AAAAGTCTATGACTGGAGACTGGTTTTTGGAGCCCATGAAATTGAATACGGAAGAAACAAGCCAGTGAAAGAGCCCCAGCAGGAAAGATACGTGCAGAAAATTGTCATCCACGAGAAATACAACGCTGTGACCGAGGGGAACGACATTGCCCTCTTGAAAGTCACTCCTCCTGTTACATGTGGGGACTTCGTTGGGCCTGGCTGCCTACCTCATTTTAAGTCTGGTCCTCCCAGAATCCCCCACACCTGCTACGTGACTGGGTGGGGATACATAAAAGATAACG
Seq A exon
NA
Seq C2 exon
GAGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029762-6-5,6-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(0.7=33.3)
Main Inclusion Isoform:
ENSRNOT00000079501fB512
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]