MmuALTA1011636-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024002 | Brd4
Description
bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
Coordinates
chr17:32198148-32198562:-
Coord C1 exon
chr17:32198357-32198562
Coord A exon
chr17:32198226-32198274
Coord C2 exon
chr17:32198148-32198225
Length
49 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TGGGGCCCCGCTCTGCCCAGGAG
3' ss Score
5.56
Exon sequences
Seq C1 exon
GACCTGAAAATTAAGAACATGGGCTCCTGGGCCAGCCTGGTACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGGAGAAGGAGGAGAGGGAAAAGGCCCTGAAGGCTCAGGCTGAGCATGCAGAGAAGGAGAAGGAGCGGCTGAGGCAGGAGCGCATGAG
Seq A exon
GAGCCGAGAGGATGAAGATGCGCTGGAACAGGCACGTCGAGCCCATGAG
Seq C2 exon
GAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024002-52-73,52-72,52-71-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGAGAGGGAAAAGGCC
R:
CTCCTGTCTCTGCTGCTGCT
Band lengths:
137-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types