RnoALTA0006098-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14225231-14225642:-
Coord C1 exon
chr7:14225437-14225642
Coord A exon
chr7:14225352-14225354
Coord C2 exon
chr7:14225231-14225351
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TGGGGCCCCGCTCTGCCCAGGAG
3' ss Score
5.56
Exon sequences
Seq C1 exon
GACCTGAAAATTAAGAACATGGGCTCCTGGGCCAGCCTGGTACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGCGACAGCTTTGAGCATTTCCGCCGCGCTGCTCGGGAGAAGGAGGAGCGGGAAAAGGCCCTGAAGGCTCAGGCTGAGCACGCAGAGAAGGAGAAGGAGCGGCTGAGGCAGGAGCGCATGAG
Seq A exon
GAG
Seq C2 exon
CCGAGAGGATGAGGATGCGCTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAACAGCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-35-43,35-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGAGGAGCGGGAAAAG
R:
CAGCGCATCCTCATCCTCTC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]