MmuALTA1014343-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22245516-22588721:+
Coord C1 exon
chr2:22245516-22245650
Coord A exon
NA
Coord C2 exon
chr2:22588683-22588721
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CGTGTAGGGTTGCAAGTCAGCTA
3' ss Score
-5.18
Exon sequences
Seq C1 exon
GATATCGATGAAGAGATTGAAGCAGAGTATAACATCTTAAGAACACTTTCTGACCACCCAAATGTGGTCAGATTCTACGGGATTTACTTTAAAAAGGACAAGATAAATGGAGATAAGCTATGGCTGGTTCTGGAG
Seq A exon
NA
Seq C2 exon
CTAAATACTTTGACACCGGTAGGAATTGCGATAATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-3-38,3-37,3-36-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.5=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTCAGATTCTACGGGAT
R:
CGCAATTCCTACCGGTGTCAA
Band lengths:
103-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types