MmuEX7033469 @ mm10
Exon Skipping
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22574230-22579857:+
Coord C1 exon
chr2:22574230-22574353
Coord A exon
chr2:22577341-22578229
Coord C2 exon
chr2:22579713-22579857
Length
889 bp
Sequences
Splice sites
3' ss Seq
TAGTTCCATGTTTTGCACAGGGA
3' ss Score
3.95
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTGCAAGAAGACATCTCTTGCGAAAACATGGAAAAGAAACATCTAATGTGAAAAGTGCAGCAGGAAGGAGCATTCGGGCTAAGGATCAGGAATTTGACTACAAGAAAAATTTTGAAACCAAAAG
Seq A exon
GGAATCTTTTGTGAAGAAACAGACAGAAAACGCAGTGCCTACTAATGAATCCAACACTTCAACTCCAAACAACAAAGAGAGCCCATCTGCTGGGAAGACAGCTCCCTTCAGAGCAGAGTCAAAGGCCACCAATGTTGAGAGTAACAACAGAAGATACCATACTCAGAAGAAAATGAGCAATGTGTATGCAGAAGGACAGAATCAAGAGCTATATATTGTGGAGGACACTTGGGCAGAAGTAAGCCCCAGGCAGAAGTATGTGCAAGACCTGGAAGAAAGCAGAAAGATGAGGAAAGAGGAGAAAGGAGATGCTGTGATCCAGAGTTACTGTCAGTGGTACACAGAGGGAAGCAACTTTGAAGAATCAAAAGCAACATGTCTAGAAGGAAGGGAGACATGGGAAAGGACAAGCTGCCCAGGGCTGTGGCTGACTGAGGAGATTTACCTGAGAAAAACTTTGGATCCTACTCTTAGCCAAAAGTCAGTCTATCAAAATGCAGATGGCAAAGAAAAAGAACATAAAGTATCTGTGGTTACCCAGAATGCACCGCTGGGCAACCTGGAGAGAGACTATCACTTGCTAGGGTTCCTTGGAGAAGAAGACACTGGACCAGTGCCTCAGGCCCAGGAAGAACACAAGGCTGTGTCCATTCATAGCAAATACCAGAGTTCCAAGAAAAAGCAACAGCTGGGAAAGGACAGGCTGGCACCTCCCTTTAAGAATCAAAAGATCCTTTCATCGTCCACAGAAGTAGCAAAAACCACTCACAATGTCTATCCCTGTCCGACAAAGCAGGAGGGAGTCCATCATAGCAAGATGGTGGATGAGAGAGACTCAAAAATGGCTTCAAAAAAAGAAGCGTGGGATTTAGCAATGTTTTCAAGACAG
Seq C2 exon
ATATCAAAGTTATCTGAAGAGTATTTCATTCTGCAGAAAAACTTGAATGAAATTATTTTGGCCCAGCAACTGAAGCCATTTTATCTAGGTATCTATCGCCATAAACCAATCAACAGACATGTTTCTACTCACCAATACCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-'27-35,'27-29,33-35=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.589 C2=0.122
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=26.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGGAACAGTTGAATCTAATGCG
R:
GCCCACCACATATTCACAGTAGG
Band lengths:
246-1135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types