DreEX6093877 @ danRer10
Exon Skipping
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6144677-6149573:-
Coord C1 exon
chr24:6149450-6149573
Coord A exon
chr24:6146761-6147877
Coord C2 exon
chr24:6144677-6144821
Length
1117 bp
Sequences
Splice sites
3' ss Seq
AATGAATGTATTCTTCACAGGGA
3' ss Score
6.98
5' ss Seq
CAGGTGTTG
5' ss Score
2.29
Exon sequences
Seq C1 exon
GGTGCAGAGGATATTTGGCAAGGCAGAATTACAAGGAGCTACTAGATGAGAAGAACAAAGCTGCTGCAAAGATCCAGGCCCATTACAGGGGACAAAAAGAGAGGAAGAGTTTCCAGAGGAAAAA
Seq A exon
GGAAGCCATGCAGAAGGAAAACACAGAGAAGACAGAAAGAGTGACAGAGGTCCCTTTAGAAGCAGACGATCCTGTTTCAGAGGAACCGCTACAGGAAGGAGGTGAAGTGGAAATGGATGATGCTGATGAAAAGGCAGCTGTGGTCCTCCAGAGCAACTACCGAGGATACAGAGAAAGGAAGAAATTCAAGGAACGTCAGGAACGGAATAAGACCTTGAGCGGAGATGAGCTGGATGCTTCCTCATCCACCCCTGAAGAAATGACTTCTGGAGAAGATCTGGAAGCTACACGAGAGGACACGCAGGAGAATGTTGAGAAAGAGGGGAATGAGGTTGAGGAAGGTGGAGGAGATGAAGACCCTGAGCAGGAAGCCAAGGCAGCCACTGTTCTCCAGAGCAACTTCAGAGGTCATAAGGAACGTAAAAGACTCCAAGAGGAAGGAAAGATACCAGTTAGAGGAAAGAAGGAGATTAAGAGTCCTACAGATGAGGAGGAGCTTCCTATTCCAGATCCACCGCCCCCTGAGGAATTGATGGAGTTTTCAGAGGAAATGGAATTTACTGAAGAAAATCCACCAGGAGAAGAAGACGAGGCCAAAGCTGCTGTGGTCCTTCAGAGCAACTTCCGTGGCCACAAAGAAAGGAAAAGACTCCAAGAGGAAGGGAAAATCCCAAAGAAAAAGACTAAAGAGGAAATGGATGATCCAGGAGCTTCAGAACCAGACATTGCCATTGAGGAGCTTCCACCGCCTCCTTTAGAACTTGAACATGATCAAGAGCTAGACTCTAGTCCATCAGGAGGAGATGAGGAACACGCTGCAACTGTTTTACAAAGCAATTTCAGAGGACACCGGGAGAGAAAGAGACTGAGAGCTGAGAAAGAAGAGGCAACAGGAGGAGGGCAAAGCACTGGAGATGTGGAGGAGCAGGAGAACAATGACGTTCTAGACATTACAGATGTTCAGCTGGAACGAAGGGAAGAAGAGGAGGAAGGACAATACGATGAGGAGCAGGCAGCCATTAAAATCCAGAGCAATTTTAGAGGCTATAAAGACCGAAAGAACCTGAAAGCTACATCTCAAAAACAAGATGAGGAAGTGGAGTCACTCTTCAAACAG
Seq C2 exon
GTATCCAAGGCCTCTGAAGACTACCTTTCCCTTCAGAAGAAGTTAAATGAAATCATCCTCGCCCATCAGCTTAACCCCAGCAAAAATGGCATGTTTGTGAAAGGACAACCCATGAATGGCTACATGGGCTACTACCAGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186-'38-34,'38-33,39-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.976 C2=0.633
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(61.1=26.2),PF0061222=IQ=WD(100=50.0)
A:
PF0061222=IQ=WD(100=5.6),PF0061222=IQ=WD(100=5.6),PF0061222=IQ=WD(100=5.6),PF0061222=IQ=WD(100=5.6),PF0061222=IQ=WD(100=5.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAGGATATTTGGCAAGG
R:
GCTGGTAGTAGCCCATGTAGC
Band lengths:
262-1379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]