HsaEX0041170 @ hg19
Exon Skipping
Gene
ENSG00000095777 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:7601]
Coordinates
chr10:26459345-26490234:+
Coord C1 exon
chr10:26459345-26459468
Coord A exon
chr10:26462592-26463486
Coord C2 exon
chr10:26490194-26490234
Length
895 bp
Sequences
Splice sites
3' ss Seq
AGATAATATATTTTACACAGGGA
3' ss Score
3.44
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTGCAAGAGGACACCTTGTCAGGAAACAAAGAAAAGAAATTGTTGACATGAAAAACACAGCAGTAACAACCATTCAAACTTCTGATCAGGAATTCGACTACAAGAAAAACTTTGAAAATACAAG
Seq A exon
GGAATCTTTCGTGAAGAAACAAGCAGAAAATGCAATCTCTGCTAATGAAAGATTCATTTCAGCTCCAAATAATAAAGGAAGTGTATCTGTAGTGAAGACTTCCACTTTCAAACCTGAAGAGGAAACCACCAATGCTGTGGAGAGTAACAACAGAGTGTATCAGACTCCAAAAAAAATGAATAATGTGTATGAGGAAGAGGTTAAGCAAGAATTCTACCTTGTAGGGCCAGAAGTAAGCCCCAAACAGAAGTCTGTCAAAGACCTGGAAGAGAACAGCAATCTAAGGAAAGTGGAGAAAGAGGAAGCTATGATCCAGAGTTACTATCAGAGGTACACAGAGGAGAGGAATTGTGAAGAGTCAAAAGCAGCATATCTAGAAAGGAAGGCCATATCAGAAAGGCCAAGCTACCCAGTGCCTTGGTTAGCTGAAAATGAGACTTCCTTTAAAAAAACTTTGGAACCTACACTTAGCCAAAGGTCAATTTATCAAAATGCAAACAGCATGGAAAAAGAAAAGAAGACATCTGTAGTTACCCAGCGTGCACCGATATGCAGCCAGGAGGAAGGCAGAGGCCGTCTGAGGCATGAGACAGTCAAAGAGAGGCAAGTTGAACCAGTGACACAGGCCCAGGAGGAAGAAGATAAAGCAGCGGTATTCATTCAGAGCAAATACCGGGGTTACAAGAGAAGGCAGCAGTTGAGGAAGGACAAGATGTCTTCTTTTAAGCATCAGAGGATTGTCACAACACCAACAGAAGTAGCAAGAAACACTCATAATTTGTATTCCTATCCCACAAAACATGAGGAAATCAATAACATCAAGAAGAAGGATAACAAAGACTCGAAAGCAACTTCAGAAAGAGAAGCATGTGGTTTGGCAATTTTTTCAAAACAG
Seq C2 exon
AAGTCAATCCAAGAAGAAAAACGAAGACCAAGGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095777_MULTIEX1-13/17=12-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.632 C2=0.643
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(47.4=21.4)
A:
PF0061222=IQ=WD(100=7.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)