HsaEX0041172 @ hg19
Exon Skipping
Gene
ENSG00000095777 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:7601]
Coordinates
chr10:26465630-26490234:+
Coord C1 exon
chr10:26465630-26465774
Coord A exon
chr10:26482134-26482240
Coord C2 exon
chr10:26490194-26490234
Length
107 bp
Sequences
Splice sites
3' ss Seq
TATGATCACCTTTCTTATAGGTG
3' ss Score
9.88
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATATCAAAGTTATCTGAAGAATATTTCATTCTGCAGAAAAAATTGAATGAAATGATTTTGTCACAGCAACTGAAGTCACTTTATCTGGGTGTCTCGCACCATAAGCCAATTAATAGACGAGTTTCTTCTCAGCAGTGCCTCTCAG
Seq A exon
GTGTCTGTAAAGGAGAGGAGCCAAAAATATTGAGACCCCCAAGACGACCCCGGAAACCCAAAACATTAAATAACCCTGAAGACTCCACATACTATTATCTACTTCAT
Seq C2 exon
AAGTCAATCCAAGAAGAAAAACGAAGACCAAGGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095777_MULTIEX1-15/17=14-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.556 C2=0.643
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATGATTTTGTCACAGCAACTGA
R:
CTGTCTTTCCTTGGTCTTCGT
Band lengths:
139-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)