GgaEX6018657 @ galGal4
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr2:16186482-16195116:-
Coord C1 exon
chr2:16194978-16195116
Coord A exon
chr2:16188771-16188880
Coord C2 exon
chr2:16186482-16186522
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTGTTTTTTTCACAGTTG
3' ss Score
10.43
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATATCAAAATTATCTGAAGACTACTTAGCATTGCAGCAAAAATTAAATGAAATGATACTGTCGCATCAGCTGAGACCTGTGATGATGTCCAAAGATAAGCAAACTAACAACCAACATTCTTCTCATGTTTGTCAGTCAG
Seq A exon
TTGCAGCCAAAGTAGAAGACACTCGCCCACTGCAAAGACCCCCAAGGAGGCCACGGAAGCCCAAGACATTAAATAACCCTGAAGATTCCACCTACTACACTCTAATACAT
Seq C2 exon
AAATCAATACAAGATGAAAAACGGAAACCAAGAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'34-39,'34-36,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.919 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000012375fB9708
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTGAAGACTACTTAGCATTGCA
R:
CTTTCTTTTCTTGGTTTCCGTTTT
Band lengths:
170-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]