RnoEX6054369 @ rn6
Exon Skipping
Gene
ENSRNOG00000018478 | Myo3a
Description
myosin IIIA [Source:RGD Symbol;Acc:1560083]
Coordinates
chr17:89138479-89156079:+
Coord C1 exon
chr17:89138479-89138623
Coord A exon
chr17:89153170-89153276
Coord C2 exon
chr17:89156039-89156079
Length
107 bp
Sequences
Splice sites
3' ss Seq
TATGATCACCCATCTTATAGGTG
3' ss Score
9.26
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATATCAAAGTTATCTGAAGAATATTTCATTCTGCAGAAAAACTTGAACGAAATTATTTTGGCCCAGCAACTGAAGCCACTTTATCTGGGTATCTGTCGACATAAACCTATCAACAGACACATTTCTACTCATCAATACCTCTCAG
Seq A exon
GTGTCTCTAAAGGAGAAGAGTCAAAAATATTGAGACCTCCAAGACGACCTCGGAAACCTAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCAT
Seq C2 exon
AAGTCAACCCAAGAAGAAAAACGAAGACCAAGAAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018478-'33-37,'33-35,34-37=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.722 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTCTGCAGAAAAACTTGAACGA
R:
CTGTCTTTTCTTGGTCTTCGTTT
Band lengths:
162-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]