DreEX6093879 @ danRer10
Exon Skipping
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6141627-6144821:-
Coord C1 exon
chr24:6144677-6144821
Coord A exon
chr24:6141762-6141853
Coord C2 exon
chr24:6141627-6141667
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTTAAACCCACAGCTG
3' ss Score
9.03
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTATCCAAGGCCTCTGAAGACTACCTTTCCCTTCAGAAGAAGTTAAATGAAATCATCCTCGCCCATCAGCTTAACCCCAGCAAAAATGGCATGTTTGTGAAAGGACAACCCATGAATGGCTACATGGGCTACTACCAGCCACCAG
Seq A exon
CTGACACAAAGCAGTCTCGAACACCACGCCGCGCACAACAACCCAAGACCCTGAACACGCCGGAGGACTCCACATACTACACACTTATTCAT
Seq C2 exon
AGGTCTGTCCAGGACGATAAAAGGAGGCCGCGGAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186-'40-36,'40-35,41-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGGCCTCTGAAGACTACC
R:
TTTCCGCGGCCTCCTTTTATC
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]