BtaEX0023564 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002123 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr13:26909661-26924929:+
Coord C1 exon
chr13:26909661-26909805
Coord A exon
chr13:26918966-26919072
Coord C2 exon
chr13:26924889-26924929
Length
107 bp
Sequences
Splice sites
3' ss Seq
TATGATCACCTTTCTTGTAGGTA
3' ss Score
9.48
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTCTCAAAGCTATCTGAAGAATATTTCATTCTGCAGAAAAAACTGAATGAAATGATCTTGTCACAGCAACTGAAGCCTCTTTATTTTGGAGTCTATCCTCATAAGCCAATTACTAGACGAGTGTCTTCTCATCAGTGCATCTCAG
Seq A exon
GTATCTCAAAAGGAGAGGAGCCAAAAATATTGAGACCCCCAAGGCGGCCCCGAAAACCCAAAACACTAAATAACTCTGAAGACTCCACATACTATTCTCTGCTTCAT
Seq C2 exon
AAATCAATCCAAGAAGAAAAACGAAGACCAAGGAAAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002123_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.750 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGAATGAAATGATCTTGTCACA
R:
CTATCTTTCCTTGGTCTTCGTTTT
Band lengths:
146-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development