MmuEX6099206 @ mm10
Exon Skipping
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22579713-22601150:+
Coord C1 exon
chr2:22579713-22579857
Coord A exon
chr2:22600082-22600188
Coord C2 exon
chr2:22601110-22601150
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTTTTATAATCACCCATAGGTG
3' ss Score
9.35
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATATCAAAGTTATCTGAAGAGTATTTCATTCTGCAGAAAAACTTGAATGAAATTATTTTGGCCCAGCAACTGAAGCCATTTTATCTAGGTATCTATCGCCATAAACCAATCAACAGACATGTTTCTACTCACCAATACCTCTCAG
Seq A exon
GTGTCTCTAAAGGGGAAGAACCAAAAATACTGAGACCTCCAAGACGACCTCGGAAACCCAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCAT
Seq C2 exon
AAGTCAACCCAAGAAGAAAAACGGAGACCAGGAAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-'44-49,'44-45,50-49=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.750 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTGTAGGGTTGCAAGTC
R:
TTGAGAGGTTACCCTGCTGCT
Band lengths:
254-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types