MmuEX6099206 @ mm9
Exon Skipping
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22435233-22456670:+
Coord C1 exon
chr2:22435233-22435377
Coord A exon
chr2:22455602-22455708
Coord C2 exon
chr2:22456630-22456670
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTTTTATAATCACCCATAGGTG
3' ss Score
9.35
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATATCAAAGTTATCTGAAGAGTATTTCATTCTGCAGAAAAACTTGAATGAAATTATTTTGGCCCAGCAACTGAAGCCATTTTATCTAGGTATCTATCGCCATAAACCAATCAACAGACATGTTTCTACTCACCAATACCTCTCAG
Seq A exon
GTGTCTCTAAAGGGGAAGAACCAAAAATACTGAGACCTCCAAGACGACCTCGGAAACCCAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCAT
Seq C2 exon
AAGTCAACCCAAGAAGAAAAACGGAGACCAGGAAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-'34-35,'34-34,35-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.750 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAGTATTTCATTCTGCAGAA
R:
CTGTCTTTTCCTGGTCTCCGT
Band lengths:
173-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: