GgaEX1038115 @ galGal4
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr2:16194978-16197515:-
Coord C1 exon
chr2:16197392-16197515
Coord A exon
chr2:16195776-16196754
Coord C2 exon
chr2:16194978-16195116
Length
979 bp
Sequences
Splice sites
3' ss Seq
CCAAACTCCATTCCATTTAGGGA
3' ss Score
6.35
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTGCCAGAGGTTACTTACTCAGGAAGAAGAGAAAAGAACTAACCGAGGCAAGGAACAAAGCAGCAACAACAATTCAATCTCACTACAGGGGATATAAGGAGAGGAAGAGCTTCAAAAGGAGGAG
Seq A exon
GGAATCACTTAGAAAGAAAGAAACTGAGAATGCGGCATCCTCTAGTGAAAAGGAGAAGGAAAAAGAACTTCAAGAAAATGAGGAATGTACAGCTGGAGTGAAGAGTGACCTTCCTAAAACAGAAGAAGAAGCAGCTATCATTGTTCAAAGCAATTACAGGGGTTACAGAGCCCGTAAAAAAATAAAGGAAGAACGCAAAAAAATAGCAGAGGAAGAATTATCTGTTGTGGAATATCTTGAAGCACAACTGCAGCCAGCTGAAGATGTTACACTGGAAGAAGCAGCGAATGAGGATACTCAAGGAGAAGGTGATGCTGTTAATGATAATGAGCACACTGGGAAGAGTGACATAGGAAATATACGGGAGCAAAAGGTAATATCTACTAAAGAAGAGAGAGCGTCTGTGAAACTGAGGCCTGCAGTAGAGCATTCTGATAAAGGTGAAGAACAGGCATCCTTGAAAGAGTCATCCAGCAAAGCATCTGTCAAAATCACAGCTGAACCTGGTCCCCAGCAGGAGCAAGCTAACCAAGACACACTGAGTGCAGATGGGCAAAATCAAGAATCTGCTGTGGTCCAGCCTGAGACAAACAAGGACGTGGAAAGAAACCATCTGAAACGTGAAGAAATGATACCTAGAGGATGTAAAGGAATTGTGAGAAAAGAGTCACTAAGAGGTTCACGGAAGCAAGCTGAAGCAGAAAAACAGAGTTTAGAGGACAAAGAGAAGGCAGCAGTGGTTATTCAGAGCAGTTACCGCGGTTACAGAAGGAGAGGACAACTCAGAAAAGAAGGGAAATTACCTTGCAAAAGTCAAGAGAACACTGCAAAGGAGTCAACAGAAGCAGTACACATTCAAAATAAAGATCCCCAAACAAAAAAAAATAAGGAAAGCAATGTGACAGAGGCTGAGAGCTCTAAGACACTGAAGGGAGGATCTGAAAAAGAGACCTGTGATTTGGCAGCCTTTTCACGGCAG
Seq C2 exon
ATATCAAAATTATCTGAAGACTACTTAGCATTGCAGCAAAAATTAAATGAAATGATACTGTCGCATCAGCTGAGACCTGTGATGATGTCCAAAGATAAGCAAACTAACAACCAACATTCTTCTCATGTTTGTCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'32-34,'32-33,33-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.864 C2=0.596
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(47.4=21.4),PF0061222=IQ=WD(100=50.0)
A:
PF0061222=IQ=WD(100=6.4),PF0061222=IQ=WD(100=5.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGAGGTTACTTACTCAGGA
R:
CTGACTGACAAACATGAGAAGAATGT
Band lengths:
262-1241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]