BtaEX6064140 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002123 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr13:26904582-26909805:+
Coord C1 exon
chr13:26904582-26904705
Coord A exon
chr13:26905895-26906813
Coord C2 exon
chr13:26909661-26909805
Length
919 bp
Sequences
Splice sites
3' ss Seq
ATGCAATATATTTTACACAGGGA
3' ss Score
4.26
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTGCAAGAGGCCATCTAGCCAGGAAACAAAGGAAGGAAACTGTTAACACACAAAACACAGCAGTAAAAACCATTCAGGCTCAAGATCAGGAATTTGACTACAAGAAAAACTTTGCAAATAAAAG
Seq A exon
GGAATCTTTTGTGAAGAAACAGACAGCGAATTCAGTCTCTGCTAATGAAACTGTCATTCCAGCTCCAAATATTAATAATAAAGGGAATACATCTGTAGTGAAGACTTGTACTTTCAAAGCTGAGGGGGAAGCCACGAATGCTGTGGAAAGTAACAACAGAGGATATCAGACTCAGAAAAAAATGAACAACGTGTATGAGGAAGAGGCTAAGCAAGAACTATATCCGGTGCAGGATGCTTGGGCAGAAGCAAACACCAGTAACAAGTATATGAAAGACTTGGAAGAAAATAGTGAGATAAGGAAAATAGGAAAGGAGGACACAGTGGTCCAGAATTTTTATCAGAAGTACACAGAGGAAAGGAATTTTGAAGACTTGAAAGCAGCATGTCTAGAACAGAAGGCCCTATCAGAAAGGCCAAGTTACCCAGGACTTTGGTCAGCAGACAAGAAGACTCCAGGTCCTAACAAGCCTTCTTGCAAAAAGACATTAGACCCTTGTCTCAGCGAGAGGTCGGTTTGTCAAAATGAAAATAGCAAGGACAAAGAAAAGAAGACATCTGTGATCACCCAGAACACACCTGTATGCAGCCGTCAGAGGAGCCATCTGAGCCACGGGGCGGTCCAGGAGAGGCAGGTGAAACCAGCCATGCAAGCCCAGGAAGAAGACAGAGCCGCGGTGTTCATTCAGAGGAAATACCGGGGCTACAAGAGGAGGCAGCAATTACGGAAGGACAGGATGTCTTCTTTTAGAAATCCAAAGGTCGTTACAACACCGACAGAAGTAGCAAGAAATACTCTCAGTTTGTATTCCTACCCCACAAAACTTGAGGACTCCTGTAACATCGGGATGAAGAGTTATAAAGATGCAAAAGCAATTTCAGAAAAAGAAGCGTGTGACTTGGCAATTTTTTCAAGACAG
Seq C2 exon
GTCTCAAAGCTATCTGAAGAATATTTCATTCTGCAGAAAAAACTGAATGAAATGATCTTGTCACAGCAACTGAAGCCTCTTTATTTTGGAGTCTATCCTCATAAGCCAATTACTAGACGAGTGTCTTCTCATCAGTGCATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002123-'27-34,'27-33,28-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.541 C2=0.041
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(47.4=21.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCTAGCCAGGAAACAAAG
R:
TGCACTGATGAGAAGACACTCG
Band lengths:
254-1173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]