MmuALTA1015902-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32929591-32932189:-
Coord C1 exon
chr2:32932091-32932189
Coord A exon
chr2:32929702-32929705
Coord C2 exon
chr2:32929591-32929701
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCCATGGGGCCATCCTGCAGGAA
3' ss Score
5.67
Exon sequences
Seq C1 exon
GCGGAATTAGAGGCCAAGAGCGAAACGAAGCAGGAAAATTACTGGCTCATCCAGTACCAACGGCTTTTAAACCAGAAGCCTTTGTCCTTGAAACTGCAG
Seq A exon
GAAG
Seq C2 exon
AAGGCATGGAGCGACGGCTGGTGGCCCTGCTGGTGGAGCTTTCTGCAGAGCACTACCTGCCCCTCTTCGCCCACCACCGCATCTCACTGGACATGCTGAGCCGAATGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792-45-46,45-45-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764712=SAM_2=PU(64.4=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCCAGTACCAACGGCTT
R:
CTCTGCAGAAAGCTCCACCAG
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types