MmuALTA1016162-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026928 | Card9
Description
caspase recruitment domain family, member 9 [Source:MGI Symbol;Acc:MGI:2685628]
Coordinates
chr2:26354830-26355524:-
Coord C1 exon
chr2:26355333-26355524
Coord A exon
chr2:26354872-26354923
Coord C2 exon
chr2:26354830-26354871
Length
52 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
3' ss Seq
CCTACACACCCCATACCCAGGTG
3' ss Score
5.48
Exon sequences
Seq C1 exon
GCTATGGCCTCCAGGGAAGAGCTGCATGCACAGTGTACCCAAAGCTTTCAGGACAAAGATAAGCTTCGAAAGCTGGTTCGAGAGCTGGGTGAGAAGGCAGATGAGCTGCAGCTACAGCTGTTCCAGACGGAGAGCCGATTACTGGCCGCCGAGGGCAGACTCAAGCAGCAGCAATTGGACATGCTCATCCTG
Seq A exon
GTGCTTGGAACCCCTACAGCCCACTGACCAACTCCCTTTTCTGTGGCCACAG
Seq C2 exon
AGCTCTGACTTGGAAGACAGTTCACCCAGGAACTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026928-13-22,13-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGAGCTGGGTGAGAAGG
R:
TCCTGGGTGAACTGTCTTCCA
Band lengths:
147-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types