RnoALTA0006880-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3800966-3801662:-
Coord C1 exon
chr3:3801471-3801662
Coord A exon
chr3:3801008-3801059
Coord C2 exon
chr3:3800966-3801007
Length
52 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
CCTACATGCCCCATGCCCAGGTG
3' ss Score
5.56
Exon sequences
Seq C1 exon
GCTATGACCTCAAGGGAAGAGCTGCATGCACAGTGTGCCCAAAGCTTTCAGGACAAAGATAAGCTGCGAAAGCAGGTTCGAGAACTGGATGAGAAGGCCGACGAGTTGCAGCTGCAGCTGTTCCAGACCGAGAGCCGATTACTGGCCGCTGAGGGCAGACTCAAGCAGCAGCAATTGGACATGCTCATCCTG
Seq A exon
GTGCTTGGAGCCCCTACCGCCCACTGACCAACTCCCTTTTCTGTGGCCACAG
Seq C2 exon
AGCTCTGACTTGGAAGACAGTTCCCCCAGGAACTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470-10-13,10-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGGATGAGAAGGCCGA
R:
ACTGTCTTCCAAGTCAGAGCT
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]