MmuALTA1016193-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026941 | Mamdc4
Description
MAM domain containing 4 [Source:MGI Symbol;Acc:MGI:2685841]
Coordinates
chr2:25563532-25564274:-
Coord C1 exon
chr2:25564166-25564274
Coord A exon
chr2:25563708-25563727
Coord C2 exon
chr2:25563532-25563707
Length
20 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
GGAACTATGTGGAGGTTCAGATG
3' ss Score
-6.42
Exon sequences
Seq C1 exon
ATTGTTTTTGAAGCCACTCTGGGTGGCCAGCCAGCTCTGGGGCCCATTGCCATTGATGATGTGCAGTACCTGGCTGGACAACAGTGCAAGCAGCCTTCACCTAGCCAGG
Seq A exon
ATGGCCCTCTTTGTCCTCAG
Seq C2 exon
GTGAAGTGGCAGCACCCGTGTCTGTGCCAGTTGCCGTTGGAGGAGCCCTCCTCTTTTTCATGTTCCTGGTGCTCATGGGCCTTGGGGGCTGGCATTGGCTGCAGAAGCAGCACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTTGCCAATATCCTCTTCAATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026941-43-41,43-40-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(18.1=81.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAAGCAGCCTTCACCTAG
R:
CCCATGAGCACCAGGAACATG
Band lengths:
105-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types