MmuALTA1016207-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25438458-25438965:+
Coord C1 exon
chr2:25438458-25438662
Coord A exon
chr2:25438801-25438861
Coord C2 exon
chr2:25438862-25438965
Length
61 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CTCCCCTCCTGGACCCCCAGGTA
3' ss Score
8.58
Exon sequences
Seq C1 exon
TCCCTGATGTCCACAACAGCCTTTGGCCTGGGTTCCAAGTACTTTGCACTGTATGAAGTGGCAGGAGTGGGCATCCAGTGGCACACGTTCAGCCAGTCCCCAGTGGAAGGAGATGACTTCAATCTGCTCCTTGCTGTCACCATGCTTATGGTGGACACGGTGGTCTACGGCGTGCTCACTTGGTACATTGAGGCTGTGCACCCAG
Seq A exon
GTATGTATGGGCTGCCCCGGCCCTGGTACTTCCCGCTACAGAAGTCCTATTGGCTGGGCAG
Seq C2 exon
TGGGCGGACAGAAGCCTGGGAGTGGAGCTGGCCATGGGCACACACACCGCGCCTCAGCGTTATGGAGGAGGACCAGGCCTGTGCCATGGAGAGCCGGCACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944-37-48,37-47,37-46,37-45-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(16.7=88.4)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGGTGGACACGGTGGTCT
R:
TCCTCCTCCATAACGCTGAGG
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types