RnoALTA0001448-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2658868-2659370:+
Coord C1 exon
chr3:2658868-2659072
Coord A exon
chr3:2659206-2659246
Coord C2 exon
chr3:2659247-2659370
Length
41 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CTCCCCTCCTGGACCCCCAGGTA
3' ss Score
8.58
Exon sequences
Seq C1 exon
TCCCTGATGTCCACAACAGCCTTCGGCCTGGGTTCCAAGTACTTTGCTCTGTATGAAGTGGCAGGTGTGGGCATCCAGTGGCACACGTTCAGCCAGTCCCCAGTGGAAGGGGATGACTTCAACCTGCTCCTTGCTGTCACCATGCTGATGGTGGACACAGTGGTCTATGGCGTACTCACTTGGTACATTGAGGCTGTGCACCCAG
Seq A exon
GTATGTATGGGCTGCCCCGGCCCTGGTACTTCCCACTACAG
Seq C2 exon
AAGTCCTATTGGCTGGGCAGTGGGCGGACAGAGACCTGGGAGTGGAGCTGGCCATGGGCACACGCACCACGCCTCAGCGTTATGGAGGAGGACCAGGCCTGTGCCATGGAGAGCCGGCACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268-31-34,31-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(17.3=88.4)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGATGACTTCAACCTGCT
R:
CTCCACTCCCAGGTCTCTGTC
Band lengths:
145-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]