MmuALTA1020177-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139354240-139354617:+
Coord C1 exon
chr5:139354240-139354389
Coord A exon
chr5:139354460-139354464
Coord C2 exon
chr5:139354465-139354617
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCTTTCTCCCTGACCTACAGGCC
3' ss Score
9.64
Exon sequences
Seq C1 exon
GCATTTTCTTTTCTTCTGGAGCTCGCTGGAGGGCGGGTCGCCAATTCACGGTGCGCACACTGCAGAGCCTGGGTGTGCAACAGCCATCCATGGTGGGCAAGGTGCTGCAGGAGCTGGCCTGTCTTAAAGGACAGCTGGATAGCTATGGAG
Seq A exon
GCCAG
Seq C2 exon
CCCCTCCCCCTGGCGCTGCTGGGTTGGGCACCCTGCAACATCACCTTCACACTTCTCTTCGGCCAGCGCTTTGACTACCAGGATCCTGTGTTTGTGTCCCTGCTGAGTCTCATTGACCAGGTCATGGTCCTGTTGGGGTCACCTGGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541-5-4,5-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGCCTGTCTTAAAGG
R:
GGCCGAAGAGAAGTGTGAAGG
Band lengths:
105-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types