BtaALTA0008609-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42309259-42309633:-
Coord C1 exon
chr25:42309484-42309633
Coord A exon
chr25:42309346-42309416
Coord C2 exon
chr25:42309259-42309345
Length
71 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AAGCCGCTCTCCACCCCCAGGCC
3' ss Score
8.47
Exon sequences
Seq C1 exon
GCGTCTTCTTCTCCTCAGGCCCACGCTGGCGGGCCGCCCGCCAGCTCACCGTACGTGCCCTCCACGGCCTGGGTGTGGGGAGGGCGCCCGTGGCCAACAAGGTCTTGCAGGAGCTGAGGTGCCTCACGGCGCAGCTGGACAGCTACGAAG
Seq A exon
GCCGGCCCTTCCCGCTGGCCCTGCTCCGCTGGGCTCCCTCCAACATCACCTTCACGCTCCTCTTCGGTCAG
Seq C2 exon
CGGTTCGACTACCGGGATCCTGTGTTCCTGTCCCTGCTGGGCCTCGTTGATGAGGTCATGGTCCTCCTGGGGAAGCCGAGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701-5-3,5-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTCTCCTCAGGCCCAC
R:
AGGAACACAGGATCCCGGTAG
Band lengths:
176-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development